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@lbcb-sci

Šikić lab

A computational group with a focus on the development of new algorithms and AI models for the analysis of DNA and RNA sequencing data and biomolecular strucures

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  1. herro herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    Rust 239 15

  2. racon racon Public

    Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

    C++ 237 33

  3. raven raven Public

    De novo genome assembler for long uncorrected reads

    C++ 229 19

  4. RiNALMo RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    Python 155 31

  5. graphmap2 graphmap2 Public

    Forked from isovic/graphmap

    GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/7204…

    C++ 70 5

  6. GNNome GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    Python 52 8

Repositories

Showing 10 of 29 repositories
  • GFMs Public

    Critical analysis of Genomic Foundation Models.

    lbcb-sci/GFMs’s past year of commit activity
    Python 2 0 0 0 Updated Feb 22, 2026
  • I002C Public

    Telomere-to-Telomere diploid Indian Genome

    lbcb-sci/I002C’s past year of commit activity
    9 0 0 0 Updated Feb 9, 2026
  • herro Public

    HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

    lbcb-sci/herro’s past year of commit activity
    Rust 239 15 40 6 Updated Feb 3, 2026
  • Campolina Public
    lbcb-sci/Campolina’s past year of commit activity
    Python 9 MIT 0 1 0 Updated Dec 24, 2025
  • GNNome Public

    A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.

    lbcb-sci/GNNome’s past year of commit activity
    Python 52 BSD-3-Clause 8 1 0 Updated Dec 9, 2025
  • MADRe Public

    Strain-level metagenomic classification with Metagenome Assembly driven Database Reduction approach

    lbcb-sci/MADRe’s past year of commit activity
    Python 11 MIT 3 0 1 Updated Nov 6, 2025
  • RiNALMo Public

    RiboNucleic Acid (RNA) Language Model

    lbcb-sci/RiNALMo’s past year of commit activity
    Python 155 Apache-2.0 31 1 0 Updated Oct 3, 2025
  • DipGNNome Public
    lbcb-sci/DipGNNome’s past year of commit activity
    Python 0 0 0 0 Updated Sep 15, 2025
  • metaxa Public
    lbcb-sci/metaxa’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Mar 25, 2025
  • BadRead-Meta-Fork Public

    BeadRead fork for metagenomics classification

    lbcb-sci/BadRead-Meta-Fork’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 20, 2025
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