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5 changes: 5 additions & 0 deletions config.yaml
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# Information for Learners
learners:
- prereqs.md
- discuss.md
- reference.md
- further-reading.md
- edge-detection.md

# Information for Instructors
instructors:
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9 changes: 9 additions & 0 deletions episodes/09-challenges.md
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- These methods are useful for many scientific problems, especially those involving morphometrics.

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## Where to go from here?

Take a look at our [curated list of resources](further-reading.md) for further publicly available courses, resources and scientific literature around image processing and more.

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31 changes: 31 additions & 0 deletions learners/further-reading.md
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---
title: Further Reading
permalink: /reading/
---

## Where to go from here

- [Scikit-image YouTube tutorials](https://www.youtube.com/playlist?list=PLBKcU7Ik-ir9Fi_hM_A6_U2UTpm7ACUtl)
- [Principles of Scientific Imaging](https://imagej.net/imaging/principles)
- [Data Handling and Management Training](https://carpentries-incubator.github.io/Data-Management-Training/)
- [Introduction to Bioimage Analysis by Pete Bankhead](https://bioimagebook.github.io/index.html)
- [Bio-image Analysis Notebooks by Robert Haase](https://haesleinhuepf.github.io/BioImageAnalysisNotebooks/intro.html)
- [Introduction to artificial neural networks in Python](https://carpentries-incubator.github.io/machine-learning-neural-python/index.html)
- [Building Better Research Software](https://carpentries-incubator.github.io/better-research-software/)

## Where to find more help

- [Image.sc Forum](https://image.sc/)
- [NFDI4BioImage Training Materials collection](https://nfdi4bioimage.github.io/training/readme.html)

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❤️

- [Curated list of image analysis resources by EPFL Center for Imaging](https://github.com/EPFL-Center-for-Imaging/awesome-scientific-image-analysis)

## Scientific Literature

- [Digital Image Processing](https://www.imageprocessingplace.com), Textbook by Rafael C. Gonzalez and Richard E. Woods
- [Checklist for publishing images and analyses ](https://www.nature.com/articles/s41592-023-01987-9)
- [Studies on application of image processing in various fields: An
overview](https://dx.doi.org/10.1088/1757-899X/961/1/012006)
- [REMBI: Recommended Metadata for Biological Images](https://www.nature.com/articles/s41592-021-01166-8)
- ["Twenty questions": a schema for a set of questions to guide analyses](https://www.nature.com/articles/s41592-023-01919-7)
- [From cells to pixels: A decision tree for designing bioimage analysis pipelines](https://onlinelibrary.wiley.com/doi/10.1111/jmi.70021)

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---
title: 'Reference'
title: 'Glossary'
---

## Glossary
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