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Databio

Solving problems in computational biology

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  1. pepatac pepatac Public

    A modular, containerized pipeline for ATAC-seq data processing

    Python 60 16

  2. COCOA COCOA Public

    Annotating epigenetic variation among samples with region sets in R

    R 11

  3. LOLAweb LOLAweb Public

    An interactive Shiny web application for genomic interval enrichment analysis using LOLA.

    R 16 2

  4. awesome-atac-analysis awesome-atac-analysis Public

    Links to ATAC-seq analysis tools

    77 6

  5. MIRA MIRA Public

    R package for Methylation-based Inference of Regulatory Activity

    R 13 2

  6. pypiper pypiper Public

    Python toolkit for building restartable pipelines

    Python 46 9

Repositories

Showing 10 of 105 repositories
  • bulkers Public
    databio/bulkers’s past year of commit activity
    Rust 0 0 0 0 Updated Feb 26, 2026
  • gtars Public

    Performance-critical tools to manipulate, analyze, and process genomic interval data

    databio/gtars’s past year of commit activity
    Rust 24 BSD-2-Clause 4 36 (2 issues need help) 1 Updated Feb 26, 2026
  • bulker-action Public
    databio/bulker-action’s past year of commit activity
    0 0 0 0 Updated Feb 26, 2026
  • bedbase-ui Public

    a modular web interface for BEDbase

    databio/bedbase-ui’s past year of commit activity
    TypeScript 0 0 1 0 Updated Feb 26, 2026
  • peppro Public

    A modular, containerized pipeline for PRO-seq data processing

    databio/peppro’s past year of commit activity
    Python 11 BSD-2-Clause 2 0 1 Updated Feb 25, 2026
  • pypiper Public

    Python toolkit for building restartable pipelines

    databio/pypiper’s past year of commit activity
    Python 46 BSD-2-Clause 9 56 0 Updated Feb 25, 2026
  • henge Public

    Keeper of DRUIDs: a Python interface to Decomposable Recursive UIDs

    databio/henge’s past year of commit activity
    Python 2 BSD-2-Clause 0 0 0 Updated Feb 25, 2026
  • bulker-python Public

    Manager for multi-container computing environments

    databio/bulker-python’s past year of commit activity
    Jupyter Notebook 26 BSD-2-Clause 2 21 (1 issue needs help) 1 Updated Feb 25, 2026
  • bedboss Public

    Python pipeline for processing BED files for BEDbase

    databio/bedboss’s past year of commit activity
    Python 2 BSD-2-Clause 0 10 1 Updated Feb 25, 2026
  • bedbase Public

    Aggregate, analyze, and serve genomic regions.

    databio/bedbase’s past year of commit activity
    Jupyter Notebook 4 0 6 0 Updated Feb 24, 2026

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